OmicsFlow®
Accelerate discovery with OmicsFlow
With assistance from Biognosys’ deployment team, OmicsFlow integrates effortlessly into your cloud environment. Designed for speed, simplicity, and scalability, our platform streamlines complex search jobs, manages resources, all while giving you full visibility into job progress and future job queues.
OmicsFlow isn’t just a tool — it’s a platform built to evolve with your research. With flexible deployment options and compatibility across environments, it’s the ideal foundation for modern data-driven discovery.
Introducing OmicsFlow®
Smarter proteomics with analysis automation
OmicsFlow is a Linux based software application, which ensures compatibility with most common cloud environments. Behind the scenes, the application is a workflow orchestration tool, which determines the available resources and creates a set of balanced parallel instances of Spectronaut®.
The platform automatically allocates resources to complete jobs efficiently while generating and recording search logs throughout the process. Once finished, the results are saved to a user-defined location and can be downloaded for review in the Windows-based Spectronaut interface, including the Viewer version.
OmicsFlow lowers the barrier to access fast, high throughput, enterprise level data analysis.
Spectronaut®
Join Us at ASMS for the Launch of Spectronaut 20
Be among the first to experience the next generation of data analysis – register now for our exclusive Breakfast Seminar at this year’s ASMS (American Society for Mass Spectrometry). Discover new features, connect with our experts, and see how Spectronaut 20 is setting a new standard in proteomics.
What users say about Spectronaut®?
Spectronaut is an excellent addition to our informatics capabilities, especially its thorough analysis of large-scale DIA phosphopeptide data and advanced modification localization.
Spectronaut is our preferred DIA software due to its high performance and user-friendly interface, which makes analyzing complex multiplex DIA datasets easy and reliable.
We have trusted Spectronaut with our DIA workflows for over 5 years. With Spectronaut, we know we get reliable results quickly and efficiently every time. This makes Spectronaut the ideal long-term solution for our DIA projects.
These companies trust us
Frequently Asked Questions
How to get OmicsFlow?
If you are interested in learning more about OmicsFlow contact us at order@biognosys.com.
Our team will be happy to arrange a personalized consultation to support you in implementing next-generation proteomics in your research facility.
The Biognosys Team is looking forward to learning more about your specific research questions.
Specifications
Supported Instruments
Spectronaut supports DIA mass spectrometry data collection collected using instruments from Bruker, Thermo Scientific, SCIEX, and Waters.
Specific supported models include:
- Bruker timsTOF™ Pro Series and timsTOF HT
- Bruker timsTOF™ SCP and timsTOF Ultra Series
- Bruker timsTOF™ Flex Bruker Impact II
- Thermo Scientific™ Orbitrap Astral Series
- Thermo Scientific™ Orbitrap Exploris™ Series
- Thermo Scientific™ Q Exactive™ Series
- Thermo Scientific™ Orbitrap Fusion™ Series
- SCIEX ZenoTOF 7600 System
- SCIEX TripleTOF® Series
- Waters Xevo® G2-XS
Supported Methods
Spectronaut supports a wide variety of DIA data acquisition methods, including but not limited to dia-PASEF, diagonal-PASEF, SWATH and FAIMS-DIA.
The minimum requirements for supported methods are a reversed-phase chromatography with either a linear or nonlinear gradient that spans at least 10-35% acetonitrile. Methods acquiring MS1 and MS2 scans are recommended, but ones acquiring only MS2 scans are also supported (in the library-based DIA analysis approach only). The cycle time of the DIA method should aim to sample chromatographic peaks sufficiently. Finally, MS1 as well as MS2 scan ranges can be segmented and data can be recorded with fractionation, including gas-phase fractionation.
For more information on supported DIA acquisition methods, please refer to the user manual.
Recommended System Requirements
Spectronaut is available for Windows and Linux operating systems (operated via command line).
Detailed, recommend specifications:
- Windows 11 x64 / Windows Server 2016 or late /Ubuntu 22.04 LTS
- Intel or AMD CPU with 16 cores or more
- 2 TB of free hard drive space or more (2x data set size)
- 16 GB of memory or more (1 precursor in 1 run amounts to ~0.5 KB of RAM)
- .NET 8.0 or higher /.NET 8.0 for Linux
*for a library-free experiment with 200 DIA runs and typical search space settings
Licensing Options
Flexible licensing is available for local, cloud, or server deployments of Spectronaut.
- Standard License: Best for small teams; includes one software instance on Windows or Linux.
- Advanced License: Includes five independent seats for local or cloud use, with support for up to five parallel analyses.
- Premium License: Customizable seat count for large-scale, parallelized analysis on cloud or local infrastructure.
Resources
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