73rd ASMS Conference 2025 - Biognosys

73rd ASMS Conference 2025

We are proud sponsors of ASMS 2025. This year, Biognosys will be attending the conference with:

  • 2 breakfast seminars
  • 1 oral presentation
  • 12 scientific posters
  • booth #103

Breakfast Seminars

Spectronaut 20: A New Era for directDIA

Tuesday Breakfast Seminar

June 3, 2025 | 7 AM | Room 343/344

 

7:00-7:10 AM – Welcome and overview – Monika Puchalska, PhD (Biognosys)

7:10-7:25 AM – Introduction to Kuiper, a game changing new search engine for directDIA – Oliver Bernhardt, MSc (Biognosys)

7:25-7:40 AM – Deep dive into directDIA immunopeptidomics with Kuiper – Monika Pepelnjak, PhD (Biognosys)

7:40-8:00 AM – Increasing the identification of ERAP1 inhibitor dependent antigens with Spectronaut 20 – Daniel Green, PhD (Greywolf Therapeutics)

8:00-8:15 AM – Q&A

 

 

From Discovery to Clinic: Accelerating Drug Development with Biognosys’ Next-Generation Proteomics Services

Wednesday Breakfast Seminar

June 4, 2025 | 7 AM | Room 343/344

 

7:00-7:15 AM – Welcome and company overview – Yuehan Feng, PhD (Biognosys)

7:15-7:40 AM – Quantitative analysis of the immunopeptidome as a pharmacodynamic biomarker for ERAP inhibitors – Daniel Green, PhD (Greywolf Therapeutics)

7:40-8:05 AM – Circulating biomarker discovery for amyloid conversion and cognitive decline: Advancing early detection from a clinical perspective – Abhay Moghekar, MD (Johns Hopkins University)

8:05-8:15 AM – Q&A

 

Can’t make it? Register anyway and you will get the recording afterwards!

Oral Presentation

Digital Proteome: A Comprehensive Multi-Tissue and Multi-Species Proteome Expression Atlas Supporting Target Discovery and Therapeutic Development

Presenter: Sandra Schaer

Date and time: Monday, June 2, 8:50 AM

Posters

Advancing Biomarker Discovery: Characterization of the P2 Technology for Plasma Samples for Pharma and Biobank, Use and Application to NSCLC

Presenter: Arthur Viode

Date: Monday, June 2

Session: Clinical Analysis I

Poster Number: MP 141

Sample Preparation Advancements for Clinical Tissue Specimen for Immunopeptidomics

Presenter: Roland Bruderer

Date: Monday, June 2

Session: Clinical Analysis I

Poster Number: MP 142

Optimizing Spectronaut’s AI-Based Peptide Property Predictors for Immunopeptidomic Applications

Presenter: An-phi Nguyen

Date: Tuesday, June 3

Session: Artificial Intelligance in MS Instrumentation and Applications II

Poster Number: TP 060

Maximizing the Ion-Usage of timsTOF Acquisitions Through Segmented Ion Mobility Elution and Curved diagonal-PASEF Methods Boosts the Analytical Performance

Presenter: Chris Below

Date: Tuesday, June 3

Session: Data-Independent Acquisition

Poster Number: TP 186

A Comprehensive Solution for PTM Analysis: Integrating Input Normalization and Improved Stoichiometry Calculations

Presenter: Monika Puchalska

Date: Tuesday, June 3

Session: Peptides: PTM Identifications

Poster Number: TP 636

Data Driven Optimization of the Chromatographic Peak Sampling in dia-PASEF for Optimal Biomarker Discovery Workflows

Presenter: Bettina Streckenbach

Date: Tuesday, June 3

Session: Proteomics Quantitative II

Poster Number: TP 721

Accelerating the Data-Driven Development of Deep Learning Models for MS Proteomics with Automated and Scalable MLOps

Presenter: Ignacio Jauregui Novo

Date: Tuesday, June 3

Session: Artificial Intelligence in MS Instrumentation and Applications II

Poster Number: TP 058

Harnessing the Ion Mobility Dimension to Improve Quantification in dia-PASEF

Presenter: Sebastian Müller

Date: Tuesday, June 3

Session: Informatics: Peptide ID and Quantification

Poster Number: TP 501

More for Less; A Memory and Runtime Efficient Library Free Workflow for a Significantly Improved Analysis of Immunopeptidomics in Spectronaut

Presenter: Oliver Bernhardt

Date: Tuesday, June 3

Session: Data-Independent Acquisition

Poster Number: TP 183

Evaluating the Efficacy of a Novel Library-Free DIA Workflow in Immunopeptidomics

Presenter: Monika Pepelnjak

Date: Wednesday, June 4

Session: Proteomics and Immunopeptidomics

Poster Number: WP 537

Efficient Peptide Identification for Immunopeptidomics DDA data

Presenter: Tikira Temu

Date: Wednesday, June 4

Session: Proteomics and Immunopeptidomics

Poster Number: WP 535

Spectronaut in the Cloud: Scalable Solutions for Large-Scale Proteomics

Presenter: Patrick Van Zalm

Date: Thursday, June 5

Session: Informatics: Workflow and Data Management

Poster Number: ThP 286

Panel Participation

Entrepreneurship in Mass Spectrometry

Workshop

Date and time: Wednesday, June 4, 5:45–7:00 PM

Room 341 – 342

Towards Guidelines for DIA Reporting Criteria

Workshop

Date and time: Monday, June 2, 5:45–7:00 PM

Ballroom IV

Contact